Here is the step-by-step solution how to point domain from Godaddy to Amazon Route53:
Login to AWS console;
Click on Route 53;
Create new Hosted Zone;
Select your new created host title and click “Go to Record Sets”;
Copy of the nameservers;
Login on your Godaddy account;
Select your domain;
Go to Nameservers and click SetNameservers;
Paste new nameservers
Thats all!
http://stackoverflow.com/questions/12433420/trying-to-move-domain-from-godaddy-to-route-53-from-aws